I have only been using the default login of mcserver and password mcserver. Fresh install (same process as when it worked) so permission should have not changed. Looks like the chown command has not changed anything but could be me doing something wrong.
Would I run chown -R mcserver:mcserver /var/games/servers/* in my server shell or the shell of the MineOS. I use freenas as the main server host with MineOS as a plugin/jail.
What version of ubuntu do you run? I might give this a try as I can easily run virtual instances of ubuntu server etc. Should save all these bugs hopefully.